Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72700.12-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. (360 aa)    
Predicted Functional Partners:
ABK71722.1
Identified by match to protein family HMM PF01266.
 
  
 0.821
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
 
 0.815
ABK75649.1
Major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
  
 
 0.803
ABK72895.1
Salicylate esterase; Identified by match to protein family HMM PF00561.
  
 
 0.798
ABK75841.1
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
 
 0.575
bioF
8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
 
 0.554
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
    
 0.546
ABK69640.1
NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
0.543
ABK74292.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
  
     0.542
ABK71453.1
Dehydrogenase; Identified by match to protein family HMM PF00107.
 
0.540
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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