Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73498.1Bacterial membrane flanked domain protein; Identified by match to protein family HMM PF03703. (172 aa)    
Predicted Functional Partners:
ABK71202.1
Bacterial membrane flanked domain family protein; Identified by match to protein family HMM PF03703.
  
  
 0.647
ABK73349.1
Conserved hypothetical protein.
  
    0.639
ABK70467.1
Conserved hypothetical protein.
  
     0.542
ABK69817.1
Conserved hypothetical protein.
 
  
 0.540
ABK71106.1
35 kDa protein; Identified by match to protein family HMM PF04012.
 
    0.539
ABK70599.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02591.
  
    0.508
ABK74073.1
CobW/P47K C- domain protein; Identified by match to protein family HMM PF07683.
 
    0.481
ABK70345.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00092.
 
  
 0.467
ABK70476.1
LppZ protein.
 
     0.465
rseA
Conserved hypothetical protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigE. ECF sigma factors are held in an inactive form by an anti-sigma factor (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily.
  
    0.463
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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