Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK73382.1Tetratricopeptide repeat protein, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (340 aa)    
Predicted Functional Partners:
ABK71537.1
Valosin containing protein-1; Identified by match to protein family HMM PF00004; Belongs to the AAA ATPase family.
 
   
 0.972
ABK72083.1
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.629
ABK71985.1
Conserved hypothetical protein.
  
 
 0.613
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.604
ABK70167.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
  
 
 0.592
ABK74109.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.
  
 
 0.587
ABK73310.1
Bacterial type II secretion system protein F domain; Identified by match to protein family HMM PF00482.
  
 
 0.570
ABK76200.1
Bacterial type II secretion system protein F domain; Identified by match to protein family HMM PF00482.
  
 
 0.570
fhaB
FHA domain protein; Regulates growth and cell division. Probably required for divisomal protein assembly under oxidative stress.
  
 
 0.549
ABK73969.1
FHA domain protein; Identified by match to protein family HMM PF00498.
  
 
 0.549
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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