Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK70820.1Putative transposition helper protein; Identified by match to protein family HMM PF01695. (284 aa)    
Predicted Functional Partners:
ABK75478.1
Transposase IstA protein, putative; Identified by match to protein family HMM PF00665.
 
 
 0.967
ABK73834.1
Transposase IstA protein, putative; Identified by match to protein family HMM PF00665.
 
 
 0.862
ABK75351.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.829
ABK70392.1
Transposase, Mutator family protein; Required for the transposition of the insertion element.
 
    0.579
ABK75694.1
IS6120, transposase; Required for the transposition of the insertion element.
 
    0.543
ABK72574.1
IS6120, transposase; Identified by similarity to SP:P35883; match to protein family HMM PF00872.
 
    0.543
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.503
ABK76050.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.427
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).
   
 
 0.419
ABK74418.1
IS1549, transposase; Identified by similarity to GP:2935133; match to protein family HMM PF01609.
 
     0.409
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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