Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK75530.1Transposase; Identified by match to protein family HMM PF00665. (337 aa)    
Predicted Functional Partners:
ABK73255.1
Putative transposase.
 
     0.946
ABK72730.1
Putative transposase.
 
     0.775
ABK73480.1
Putative transposase.
 
     0.774
ABK70021.1
IS1137, transposase orfB; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF00665.
 
     0.639
ABK75747.1
IS1137, transposase orfB; Similar at the nucleotide level to IS1137 in the IS Finder database; identified by match to protein family HMM PF00665.
 
     0.639
ABK74645.1
ISMsm1, transposase orfB; Identified by similarity to GP:16551202; match to protein family HMM PF00665.
 
     0.622
ABK70089.1
ISMsm1, transposase orfB; This gene is similar at the protein level with ISRru1 in the IS Finder database; identified by similarity to GP:16551202; match to protein family HMM PF00665.
 
     0.622
ABK74652.1
IS1549, transposase; Identified by similarity to GP:2935133; match to protein family HMM PF01609.
 
     0.612
ABK73342.1
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.566
ABK74804.1
ISMsm6, transposase; Identified by similarity to GP:2935133; match to protein family HMM PF01609.
 
     0.549
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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