Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70849.1Putative HTH-type transcriptional regulator YnfL; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
ABK72737.1
Muconate cycloisomerase; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.870
catA
Catechol 1,2-dioxygenase; Identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02438.
 
  
 0.827
ABK73752.1
Muconolactone delta-isomerase 1; Identified by match to protein family HMM PF02426; Belongs to the muconolactone Delta-isomerase family.
 
  
 0.784
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
 
  
 0.701
ABK72885.1
LysR-family protein transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.686
ABK72966.1
Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.635
ABK72776.1
Toluate 1,2-dioxygenase beta subunit; Identified by match to protein family HMM PF00866.
 
   
 0.613
ABK74699.1
Benzoate 1,2-dioxygenase alpha subunit; Identified by match to protein family HMM PF00355; match to protein family HMM PF00848.
 
   
 0.599
ABK75893.1
DNA-binding HTH domain containing protein, putative; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721.
 
     0.592
ABK73329.1
Transcriptional regulator, LysR family protein; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.483
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.