Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74693.1Conserved hypothetical protein. (405 aa)    
Predicted Functional Partners:
ABK71608.1
DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family.
  
    0.841
ABK73961.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02569.
 
     0.810
ABK69526.1
LppL protein.
 
  
 0.792
ABK74778.1
Probable conserved transmembrane protein.
  
     0.774
ABK70804.1
Conserved hypothetical protein.
  
     0.774
ABK72696.1
Conserved hypothetical protein.
  
     0.774
ABK73241.1
Conserved hypothetical protein.
  
     0.773
ABK74620.1
Conserved hypothetical protein.
  
     0.773
ABK73297.1
Conserved hypothetical protein.
  
     0.771
ABK75644.1
Conserved hypothetical protein.
  
     0.771
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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