Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK72683.1TetR-family protein transcriptional regulator; Identified by match to protein family HMM PF00440. (219 aa)    
Predicted Functional Partners:
ABK71802.1
Putative Lsr2 protein.
   
  
 0.828
ABK74061.1
DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
   
  
 0.613
ABK75931.1
Iron repressor protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
  
  
 0.572
hup
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions; Belongs to the bacterial histone-like protein family.
      
 0.563
ABK72430.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
  
 0.539
ABK74802.1
Methionine synthase, vitamin-B12 independent; Identified by match to protein family HMM PF01717.
  
 
   0.484
ABK70295.1
Regulatory protein GntR, HTH; Identified by match to protein family HMM PF00392.
  
  
 0.478
ABK71732.1
Conserved hypothetical protein.
       0.476
ABK69677.1
Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.
    
 0.451
ABK72706.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
   
  
 0.441
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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