Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71732.1Conserved hypothetical protein. (344 aa)    
Predicted Functional Partners:
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
  
 0.832
ABK73961.1
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02569.
 
    0.752
rseA
Conserved hypothetical protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigE. ECF sigma factors are held in an inactive form by an anti-sigma factor (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily.
  
    0.731
ABK72696.1
Conserved hypothetical protein.
  
    0.723
ABK69866.1
Conserved hypothetical protein.
  
     0.718
ABK71039.1
Conserved hypothetical protein.
  
    0.703
ABK75690.1
Conserved hypothetical protein.
  
  
  0.694
ABK73241.1
Conserved hypothetical protein.
  
     0.688
ABK76005.1
Conserved hypothetical protein.
  
     0.683
ABK69890.1
Conserved hypothetical protein.
  
     0.680
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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