STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71883.12,3-dihydroxybiphenyl 1,2-dioxygenase; Identified by match to protein family HMM PF00903. (307 aa)    
Predicted Functional Partners:
ABK72848.1
Putative HpcE protein; Identified by match to protein family HMM PF01557.
 
  
 0.842
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
 
 
 0.791
ABK73908.1
Regulatory protein GntR, HTH:GntR; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
   
 0.650
ABK73921.1
Amidohydrolase 2; Identified by match to protein family HMM PF04909.
 
  
 0.616
ABK74571.1
Identified by match to protein family HMM PF04909.
 
  
 0.606
ABK72945.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
ABK76131.1
Amidohydrolase 2; Identified by match to protein family HMM PF04909.
 
  
 0.571
ABK73132.1
Amidohydrolase 2; Identified by match to protein family HMM PF04909.
 
  
 0.566
ABK75307.1
Sugar phosphate isomerase/epimerase; Identified by match to protein family HMM PF01261.
 
     0.563
ABK75057.1
Peptidase S15; Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.
 
     0.548
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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