ABK73672.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73672.1

Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764. (134 aa)

Predicted Functional Partners:

modA

0.956

modB

0.941

ABK73833.1

0.925

ABK72941.1

0.598

ABK70362.1

0.499

ABK75127.1

0.465

cysT

0.416

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70362.1	ABK73672.1	MSMEG_4186	MSMEG_2017	Conserved hypothetical protein; Identified by match to protein family HMM PF01908.	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	0.499
ABK72941.1	ABK73672.1	MSMEG_2019	MSMEG_2017	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	0.598
ABK72941.1	ABK73833.1	MSMEG_2019	MSMEG_2014	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	0.541
ABK72941.1	modA	MSMEG_2019	MSMEG_2016	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.	0.541
ABK72941.1	modB	MSMEG_2019	MSMEG_2015	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.541
ABK73672.1	ABK70362.1	MSMEG_2017	MSMEG_4186	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Conserved hypothetical protein; Identified by match to protein family HMM PF01908.	0.499
ABK73672.1	ABK72941.1	MSMEG_2017	MSMEG_2019	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.598
ABK73672.1	ABK73833.1	MSMEG_2017	MSMEG_2014	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	0.925
ABK73672.1	ABK75127.1	MSMEG_2017	MSMEG_5699	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Identified by match to protein family HMM PF02597.	0.465
ABK73672.1	cysT	MSMEG_2017	MSMEG_4532	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.	0.416
ABK73672.1	modA	MSMEG_2017	MSMEG_2016	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.	0.956
ABK73672.1	modB	MSMEG_2017	MSMEG_2015	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.941
ABK73833.1	ABK72941.1	MSMEG_2014	MSMEG_2019	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.541
ABK73833.1	ABK73672.1	MSMEG_2014	MSMEG_2017	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	0.925
ABK73833.1	cysT	MSMEG_2014	MSMEG_4532	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.	0.874
ABK73833.1	modA	MSMEG_2014	MSMEG_2016	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.	0.997
ABK73833.1	modB	MSMEG_2014	MSMEG_2015	Molybdenum import ATP-binding protein ModC; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.999
ABK75127.1	ABK73672.1	MSMEG_5699	MSMEG_2017	Identified by match to protein family HMM PF02597.	Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376; match to protein family HMM PF03459; match to protein family HMM TIGR01764.	0.465
ABK75127.1	modA	MSMEG_5699	MSMEG_2016	Identified by match to protein family HMM PF02597.	Molybdate ABC transporter, periplasmic molybdate-binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256.	0.570
ABK75127.1	modB	MSMEG_5699	MSMEG_2015	Identified by match to protein family HMM PF02597.	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.455

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About