Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73851.1GntT protein, putative; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808. (484 aa)    
Predicted Functional Partners:
aroK
Shikimate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313.
 
  
 0.782
ABK75555.1
hydroxymethylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
    0.762
ABK69876.1
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
    0.748
ABK71234.1
Putative IclR family protein transcriptional regulator; Identified by match to protein family HMM PF01614.
       0.703
ABK73499.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.645
ABK74137.1
6-phosphogluconate dehydrogenase, decarboxylating; Identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872.
 
  
 0.566
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
     
 0.561
ABK71405.1
Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.
 
  
 0.545
ABK75464.1
Carbohydrate kinase, fggy; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
 
  
 0.540
ABK74028.1
Putative xylulose kinase; Identified by match to protein family HMM PF00370.
 
  
 0.526
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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