Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70393.1Identified by match to protein family HMM PF01266. (519 aa)    
Predicted Functional Partners:
ABK73298.1
Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.756
ABK71939.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
     
 0.648
ABK73456.1
Amine oxidase [flavin-containing] B; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
  
 0.618
ABK72830.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04461; Belongs to the UPF0234 family.
  
    0.580
ABK74273.1
Bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase; Identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; Belongs to the long-chain O-acyltransferase family.
 
 
 0.512
ABK72469.1
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
 
   
 0.506
ABK71811.1
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
 
 0.477
ABK73340.1
Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
 
 0.442
gpsA-2
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.440
ABK75179.1
Very-long-chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.
  
  
 0.431
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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