Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK72947.1Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (437 aa)    
Predicted Functional Partners:
ABK71963.1
Monoxygenase; Identified by match to protein family HMM PF00296.
  
    0.778
ABK74251.1
Identified by match to protein family HMM PF02585.
  
  
 0.758
ABK71581.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
       0.691
ABK75689.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
       0.580
ABK74890.1
Identified by match to protein family HMM PF01636.
  
    0.461
ABK75662.1
Ferric iron-binding periplasmic protein of ABC transporter; Identified by match to protein family HMM PF01547.
  
  
 0.437
ABK71334.1
ABC Polyamine/Opine/Phosphonate transporter, periplasmic ligand binding protein.
  
  
 0.437
ABK74489.1
ABC transporter, periplasmic substrate-binding protein, putative.
  
  
 0.437
ABK72251.1
Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
 
  
0.405
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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