Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72649.1Hypothetical protein; Identified by Glimmer2; putative. (118 aa)    
Predicted Functional Partners:
ABK74806.1
Identified by match to protein family HMM PF01636.
      0.968
ABK70133.1
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
 0.896
ABK72429.1
Conserved hypothetical protein.
     
 0.862
ABK73940.1
3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682.
  
  
 0.860
hmgA
Homogentisate 1,2-dioxygenase; Identified by match to protein family HMM PF04209.
     
 0.860
ABK72430.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
     
 0.797
ABK71174.1
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
       0.777
ABK70656.1
acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028.
  
 0.628
ABK73431.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04229.
       0.511
ABK73305.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
  
  0.508
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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