STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70152.1Nitrate transport ATP-binding protein NrtD; Identified by match to protein family HMM PF00005. (273 aa)    
Predicted Functional Partners:
ABK72173.1
ABC transporter, substrate binding protein [nitrate/sulfonate], putative.
 
 0.984
ABK75548.1
Taurine transport system permease protein TauC; Identified by match to protein family HMM PF00528.
 
 0.904
ABK74289.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
 0.902
ABK71685.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.898
ABK74926.1
Taurine transport system permease protein TauC; Identified by match to protein family HMM PF00528.
 
 0.897
ABK69710.1
Transporter permease 2, putative; Identified by match to protein family HMM PF00528.
 
 0.889
ABK73747.1
ABC transporter, membrane spanning protein, putative; Identified by match to protein family HMM PF00528.
 
 0.888
ABK71895.1
Putative aliphatic sulfonates transport permease protein SsuC; Identified by match to protein family HMM PF00528.
 
 0.887
ABK72289.1
Transporter permease 1; Identified by match to protein family HMM PF00528.
 
 0.880
ABK74846.1
ABC transporter permease; Identified by match to protein family HMM PF00528.
 
 0.879
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.