Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72578.1Conserved hypothetical protein. (385 aa)    
Predicted Functional Partners:
ABK74913.1
Conserved hypothetical protein.
 
     0.967
ABK73580.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00440; match to protein family HMM PF02796.
 
     0.899
ABK70397.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
     0.798
ABK70575.1
Conserved hypothetical protein.
  
     0.727
ABK74901.1
Conserved hypothetical protein.
  
     0.569
ABK70025.1
Conserved hypothetical protein.
  
     0.549
ABK76101.1
Conserved hypothetical protein.
       0.530
ABK74113.1
Identified by match to protein family HMM PF03061.
  
     0.514
ABK69760.1
Conserved hypothetical protein.
  
     0.510
ABK75570.1
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.501
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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