STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69945.1Conserved hypothetical protein. (177 aa)    
Predicted Functional Partners:
ABK76009.1
Secreted protein.
 
    0.957
ABK73831.1
B12 binding domain protein; Identified by match to protein family HMM PF02310.
  
     0.684
ABK74572.1
Anti-sigma factor antagonist; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
  
    0.674
ABK74300.1
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. May play some role in the pathogenicity.
       0.573
ABK71745.1
Transcriptional Regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.529
ABK76188.1
Magnesium or manganese-dependent protein phosphatase; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
  
     0.519
ABK75797.1
Conserved hypothetical protein.
  
     0.516
ABK69658.1
Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.
  
     0.508
ABK70408.1
Transcriptional regulator; Identified by match to protein family HMM PF00440.
  
     0.486
ABK71074.1
Transglycosylase associated protein.
 
    0.484
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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