Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK76225.1trans-2-enoyl-CoA reductase; Identified by match to protein family HMM PF00107. (327 aa)    
Predicted Functional Partners:
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
     
 0.767
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 0.760
ABK76134.1
Oxidoreductase.
  
     0.727
ABK72363.1
Quinone oxidoreductase; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824.
  
     0.711
ABK73574.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05368.
  
 
 0.705
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.700
ABK74922.1
feruloyl-CoA synthetase; Identified by match to protein family HMM PF00501.
  
 0.667
ABK71396.1
acyl-CoA synthase; Identified by match to protein family HMM PF00501.
  
 0.667
ABK75841.1
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
  
    0.665
ABK72259.1
acyl-CoA synthase; Identified by match to protein family HMM PF00501.
  
 0.665
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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