Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
ABK74074.1Conserved hypothetical protein; Identified by match to protein family HMM PF05114. (284 aa)    
Predicted Functional Partners:
ABK71717.1
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.944
ABK70784.1
DoxX subfamily protein, putative; Identified by match to protein family HMM PF07681.
 
  
 0.560
ABK74175.1
Cation-transporting ATPase Pma1; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.
   
    0.553
ctpE
P-type ATPase - metal cation transport; P-type ATPase involved in specific uptake of calcium. Essential for growth and maintenance of cell surface integrity under Ca(2+)-deficient conditions.
   
    0.553
ABK73418.1
Conserved hypothetical protein.
 
    0.514
ABK71734.1
Rmt2 protein.
 
    0.494
ABK70470.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.492
ABK73574.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05368.
  
    0.492
ABK71547.1
DoxX subfamily protein, putative; Identified by match to protein family HMM PF07681.
  
  
 0.490
ABK74674.1
DoxX subfamily protein, putative; Identified by match to protein family HMM PF07681.
  
  
 0.490
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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