STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74594.1MmcJ protein. (279 aa)    
Predicted Functional Partners:
ABK73112.1
Aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
     
 0.717
ABK72268.1
N5,N10- methylenetetrahydromethanopterin reductase-related protein.
  
     0.699
ABK75525.1
Identified by match to protein family HMM PF00296.
  
     0.628
ABK70757.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.561
ABK75607.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.559
ABK72942.1
Monooxygenase; Identified by match to protein family HMM PF00296.
  
     0.545
ABK73624.1
Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
   
 0.527
ABK75915.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
     0.518
ABK74557.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
   
 0.484
ABK74167.1
Conserved hypothetical protein TIGR00026; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
   
 0.476
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.