Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK74863.1Hypothetical protein; Identified by Glimmer2; putative. (65 aa)    
Predicted Functional Partners:
ABK72955.1
Identified by match to protein family HMM PF03446; match to protein family HMM PF03807.
  
    0.779
ABK69949.1
Aminopeptidase, putative; Identified by match to protein family HMM PF00557.
  
    0.711
ABK72539.1
Transketolase, N- subunit; Identified by match to protein family HMM PF00456.
       0.449
ABK73739.1
Transketoloase, C half; Identified by match to protein family HMM PF02779; match to protein family HMM PF02780.
       0.449
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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