ABK75114.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK75114.1

Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106. (273 aa)

Predicted Functional Partners:

ABK70103.1

0.909

ABK75039.1

0.880

ABK75087.1

0.775

ABK73384.1

0.760

ABK69795.1

0.725

ABK72398.1

0.698

ABK74281.1

0.697

ABK76118.1

0.682

ABK73646.1

0.659

ABK73068.1

0.650

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69795.1	ABK70103.1	MSMEG_2228	MSMEG_4757	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.972
ABK69795.1	ABK72398.1	MSMEG_2228	MSMEG_0019	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.698
ABK69795.1	ABK75114.1	MSMEG_2228	MSMEG_2204	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106.	0.725
ABK70103.1	ABK69795.1	MSMEG_4757	MSMEG_2228	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.972
ABK70103.1	ABK72398.1	MSMEG_4757	MSMEG_0019	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.999
ABK70103.1	ABK73384.1	MSMEG_4757	MSMEG_2205	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.661
ABK70103.1	ABK74281.1	MSMEG_4757	MSMEG_4376	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.909
ABK70103.1	ABK75114.1	MSMEG_4757	MSMEG_2204	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106.	0.909
ABK70103.1	ABK76118.1	MSMEG_4757	MSMEG_2207	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Beta-ketothiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.785
ABK72398.1	ABK69795.1	MSMEG_0019	MSMEG_2228	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.698
ABK72398.1	ABK70103.1	MSMEG_0019	MSMEG_4757	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.999
ABK72398.1	ABK74281.1	MSMEG_0019	MSMEG_4376	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.698
ABK72398.1	ABK75114.1	MSMEG_0019	MSMEG_2204	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106.	0.698
ABK73068.1	ABK73646.1	MSMEG_1423	MSMEG_1422	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Conserved hypothetical protein.	0.987
ABK73068.1	ABK75039.1	MSMEG_1423	MSMEG_1420	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.	0.914
ABK73068.1	ABK75114.1	MSMEG_1423	MSMEG_2204	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106.	0.650
ABK73384.1	ABK70103.1	MSMEG_2205	MSMEG_4757	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.661
ABK73384.1	ABK75114.1	MSMEG_2205	MSMEG_2204	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Carveol dehydrogenase ((+)-trans-carveol dehydrogenase); Identified by match to protein family HMM PF00106.	0.760
ABK73384.1	ABK76118.1	MSMEG_2205	MSMEG_2207	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Beta-ketothiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.822
ABK73646.1	ABK73068.1	MSMEG_1422	MSMEG_1423	Conserved hypothetical protein.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.987

page 1 of 3

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About