Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74564.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. (245 aa)    
Predicted Functional Partners:
ABK74782.1
Identified by match to protein family HMM PF04909.
 
     0.822
ABK71634.1
Identified by match to protein family HMM PF00899.
  
  
 0.785
ABK71150.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
ABK69795.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
 
     0.747
ABK73391.1
Conserved hypothetical protein.
  
  
 0.730
ABK73891.1
acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF00441.
 
     0.715
ABK71957.1
Identified by match to protein family HMM PF04909.
  
     0.713
ABK73531.1
Conserved hypothetical protein.
  
     0.700
ABK72509.1
Conserved hypothetical protein.
  
     0.698
ABK70702.1
Conserved hypothetical protein.
  
     0.693
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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