Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71781.1Identified by match to protein family HMM PF04909. (411 aa)    
Predicted Functional Partners:
ABK73531.1
Conserved hypothetical protein.
 
     0.764
ABK72714.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441.
 
  
 0.758
ABK72357.1
Conserved hypothetical protein.
 
     0.754
ABK70246.1
Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.
 
  
 0.748
ABK72974.1
Conserved hypothetical protein.
  
    0.741
ABK74316.1
Conserved hypothetical protein.
 
  
 0.731
ABK72704.1
Identified by match to protein family HMM PF04909.
  
     0.728
ABK71768.1
Conserved domain protein.
  
     0.722
ABK70546.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.722
ABK73570.1
Conserved hypothetical protein.
  
    0.717
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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