Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74346.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (246 aa)    
Predicted Functional Partners:
ABK70900.1
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
       0.782
ABK74782.1
Identified by match to protein family HMM PF04909.
 
     0.696
ABK71957.1
Identified by match to protein family HMM PF04909.
  
     0.691
ABK71781.1
Identified by match to protein family HMM PF04909.
  
     0.661
ABK70468.1
Identified by match to protein family HMM PF04909.
  
     0.629
ABK73397.1
Conserved hypothetical protein.
  
     0.625
ABK73531.1
Conserved hypothetical protein.
  
     0.620
ABK72509.1
Conserved hypothetical protein.
  
    0.596
ABK70702.1
Conserved hypothetical protein.
  
     0.581
ABK71634.1
Identified by match to protein family HMM PF00899.
  
  
 0.536
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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