Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK72267.1Conserved hypothetical protein. (67 aa)    
Predicted Functional Partners:
ABK70816.1
Identified by match to protein family HMM PF02554.
 
  
 0.931
ABK76139.1
Pyruvate synthase; Identified by match to protein family HMM PF01855.
    
  0.743
ABK71313.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02698.
  
     0.486
ABK73681.1
Cobalamin synthesis protein; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
  
  
 0.482
ABK70969.1
Cobalamin synthesis protein/P47K; Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
  
  
 0.482
ABK74073.1
CobW/P47K C- domain protein; Identified by match to protein family HMM PF07683.
  
  
 0.482
pckG
Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
     
 0.407
ABK69749.1
NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.
     
 0.407
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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