STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK75661.1Peptidase M52, hydrogen uptake protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072. (265 aa)    
Predicted Functional Partners:
hybC
Hydrogenase-2, large subunit; Identified by match to protein family HMM PF00374.
 
 0.962
hybA
Hydrogenase-2, small subunit; Identified by match to protein family HMM PF01058.
 
  
 0.926
ABK71773.1
NHL repeat protein; Identified by match to protein family HMM PF01436.
 
    0.807
ABK70033.1
Tetratricopeptide repeat domain protein.
 
     0.805
ABK70522.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.804
ABK72538.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.
 
    0.794
hypC-2
Hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
 
  
 0.720
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.687
hypC-3
Hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
 
  
 0.681
ABK70991.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02577.
     
 0.679
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.