Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71773.1NHL repeat protein; Identified by match to protein family HMM PF01436. (391 aa)    
Predicted Functional Partners:
ABK70033.1
Tetratricopeptide repeat domain protein.
 
  
 0.954
ABK72538.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.
 
    0.950
ABK75661.1
Peptidase M52, hydrogen uptake protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
 
    0.807
hybA
Hydrogenase-2, small subunit; Identified by match to protein family HMM PF01058.
 
    0.786
hybC
Hydrogenase-2, large subunit; Identified by match to protein family HMM PF00374.
 
     0.785
ABK75089.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.769
hypC-3
Hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
 
    0.564
ABK72373.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00165.
 
 
 
 0.510
ABK69753.1
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.502
ABK72306.1
Protein phosphatase 2C; Identified by match to protein family HMM PF00481.
  
 
 0.501
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.