ABK73304.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73304.1

Methyltransferase type 11; Identified by match to protein family HMM PF01170. (271 aa)

Predicted Functional Partners:

ABK70899.1

0.711

ABK71774.1

0.618

ABK72398.1

0.557

bioB

0.495

pks

0.494

gcvP

0.493

ABK73484.1

0.489

ABK73340.1

0.489

ABK71037.1

0.489

ABK75365.1

0.489

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70899.1	ABK73304.1	MSMEG_2286	MSMEG_2285	Aminoglycoside phosphotransferase; Identified by match to protein family HMM PF01636.	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	0.711
ABK71037.1	ABK73304.1	MSMEG_3318	MSMEG_2285	Oxidoreductase; Identified by match to protein family HMM PF01494.	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	0.489
ABK71037.1	pks	MSMEG_3318	MSMEG_0408	Oxidoreductase; Identified by match to protein family HMM PF01494.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.495
ABK71774.1	ABK72398.1	MSMEG_6392	MSMEG_0019	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.999
ABK71774.1	ABK73304.1	MSMEG_6392	MSMEG_2285	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	0.618
ABK71774.1	pks	MSMEG_6392	MSMEG_0408	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.998
ABK72398.1	ABK71774.1	MSMEG_0019	MSMEG_6392	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.999
ABK72398.1	ABK73304.1	MSMEG_0019	MSMEG_2285	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	0.557
ABK72398.1	ABK75365.1	MSMEG_0019	MSMEG_5719	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Oxidoreductase; Identified by match to protein family HMM PF01494.	0.401
ABK72398.1	pks	MSMEG_0019	MSMEG_0408	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.999
ABK73304.1	ABK70899.1	MSMEG_2285	MSMEG_2286	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Aminoglycoside phosphotransferase; Identified by match to protein family HMM PF01636.	0.711
ABK73304.1	ABK71037.1	MSMEG_2285	MSMEG_3318	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Oxidoreductase; Identified by match to protein family HMM PF01494.	0.489
ABK73304.1	ABK71774.1	MSMEG_2285	MSMEG_6392	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.618
ABK73304.1	ABK72398.1	MSMEG_2285	MSMEG_0019	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.557
ABK73304.1	ABK73340.1	MSMEG_2285	MSMEG_3039	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.	0.489
ABK73304.1	ABK73484.1	MSMEG_2285	MSMEG_1980	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Monooxygenase; Identified by match to protein family HMM PF01494.	0.489
ABK73304.1	ABK75365.1	MSMEG_2285	MSMEG_5719	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Oxidoreductase; Identified by match to protein family HMM PF01494.	0.489
ABK73304.1	bioB	MSMEG_2285	MSMEG_3194	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.	0.495
ABK73304.1	gcvP	MSMEG_2285	MSMEG_3642	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.493
ABK73304.1	pks	MSMEG_2285	MSMEG_0408	Methyltransferase type 11; Identified by match to protein family HMM PF01170.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.494