STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70143.1Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. (219 aa)    
Predicted Functional Partners:
ABK75247.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
 
     0.773
ABK72706.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.718
ABK73949.1
Conserved hypothetical protein.
  
     0.637
ABK74136.1
Erp protein.
  
   
 0.609
ABK75153.1
Conserved hypothetical protein.
  
   
 0.592
ABK70936.1
Conserved hypothetical protein.
  
   
 0.592
ABK74262.1
Conserved hypothetical protein, putative; Identified by match to protein family HMM PF00657.
  
     0.586
ABK72421.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.575
ABK70716.1
Identified by match to protein family HMM PF01476.
  
   
 0.571
ABK74255.1
Immunogenic protein MPT63.
  
     0.561
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.