Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK75048.1Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440. (245 aa)    
Predicted Functional Partners:
ABK72395.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
      
 0.824
ABK73237.1
MaoC like domain protein; Identified by match to protein family HMM PF01575.
 
   
 0.648
ABK73081.1
Antigen 34 kDa.
  
     0.621
ABK69691.1
Geranylgeranyl reductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032.
     
 0.545
ABK75765.1
Putative conserved membrane alanine rich protein.
  
     0.540
ABK74980.1
Monooxygenase.
       0.527
ABK73399.1
Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.
  
   
 0.519
FabG
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
 
     0.513
ABK69526.1
LppL protein.
  
     0.489
ABK75635.1
Stas domain protein; Identified by match to protein family HMM PF01740.
  
   
 0.479
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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