STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72934.1Identified by match to protein family HMM PF00756. (460 aa)    
Predicted Functional Partners:
ABK74062.1
Conserved hypothetical protein.
       0.773
ABK73953.1
LppW protein.
  
   
 0.602
ABK72891.1
Conserved hypothetical protein.
  
     0.573
ABK71415.1
Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268.
       0.572
ABK73037.1
Putative conserved membrane protein.
 
  
 0.553
ABK70803.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.550
ABK71499.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
   
 0.540
ABK70482.1
LprC protein.
 
   
 0.533
ABK71593.1
LprB protein.
 
   
 0.528
ABK70706.1
Probable exported protein.
  
     0.514
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.