Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK75360.1Immunogenic protein MPB64/MPT64. (233 aa)    
Predicted Functional Partners:
rpmD
Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308.
   
 0.862
ABK74628.1
Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850.
   
 0.850
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.841
ABK74513.1
Fasciclin domain protein; Identified by match to protein family HMM PF02469.
      
 0.835
ABK71018.1
Conserved hypothetical protein.
  
 0.826
ABK70019.1
Peptidase M22, glycoprotease; Identified by match to protein family HMM PF00814.
      
 0.812
ABK72045.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
      
 0.812
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 0.809
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
 0.807
ABK75863.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Identified by match to protein family HMM PF00578.
     
 0.807
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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