Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74949.1Phytoene dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734. (517 aa)    
Predicted Functional Partners:
ABK70725.1
Phytoene synthase; Identified by match to protein family HMM PF00494.
 
 0.999
ABK72670.1
Dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
 
 
0.778
ABK70694.1
Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
 
 0.748
ABK72276.1
Chelatase; Identified by match to protein family HMM PF00092; match to protein family HMM PF01078; match to protein family HMM PF07728.
 
 
 0.736
ABK74893.1
Methylesterase; Identified by match to protein family HMM PF00355.
 
  
 0.672
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
     
 0.600
ABK73286.1
propionyl-CoA carboxylase beta chain; Identified by match to protein family HMM PF01039.
     
 0.576
cobN
Cobaltochelatase, CobN subunit; Identified by match to protein family HMM PF02514; match to protein family HMM TIGR02257.
 
  
 0.571
ABK73021.1
[NiFe] hydrogenase, beta subunit, putative; Identified by match to protein family HMM PF00037.
    
 0.570
ABK74757.1
Deoxyribodipyrimidine photo-lyase; Identified by match to protein family HMM PF00875; match to protein family HMM PF03441; Belongs to the DNA photolyase family.
 
  
 0.562
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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