Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK73953.1LppW protein. (314 aa)    
Predicted Functional Partners:
ABK72323.1
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.
  
 
 0.729
ABK74007.1
Conserved hypothetical protein.
  
   
 0.728
ABK73385.1
Conserved hypothetical protein.
 
  
 0.702
ABK75545.1
Conserved hypothetical protein.
 
  
 0.681
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
     0.671
ABK75153.1
Conserved hypothetical protein.
  
    0.643
ABK70936.1
Conserved hypothetical protein.
  
    0.643
ABK71593.1
LprB protein.
 
    0.641
ABK70482.1
LprC protein.
 
    0.630
ABK72328.1
Identified by match to protein family HMM PF00756.
  
   
 0.629
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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