Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK69766.1L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (411 aa)    
Predicted Functional Partners:
ABK74157.1
MaoC like domain protein; Identified by match to protein family HMM PF01575.
 
 
 0.897
ABK69837.1
acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.
  
 
  0.872
ABK70730.1
Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.
   
 
 0.777
ABK74370.1
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
     0.751
ABK69754.1
glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
  
 
 0.729
ABK70258.1
Conserved hypothetical protein; Belongs to the CoA-transferase III family.
  
     0.723
ABK74114.1
alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
     0.644
ABK74196.1
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
  
 
 0.563
ABK76148.1
Adenine deaminase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
       0.546
ABK75292.1
P40 protein.
 
 
 0.518
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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