ABK73625.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73625.1

Conserved hypothetical protein. (407 aa)

Predicted Functional Partners:

ABK75883.1

0.753

ABK72091.1

0.746

ABK73701.1

0.727

ABK70707.1

0.592

ABK74467.1

0.571

ABK69986.1

0.548

ABK74475.1

0.540

ABK75619.1

0.532

ABK75319.1

0.530

ABK73217.1

0.530

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69986.1	ABK70707.1	MSMEG_2493	MSMEG_2494	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	0.844
ABK69986.1	ABK72091.1	MSMEG_2493	MSMEG_2497	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	0.578
ABK69986.1	ABK73625.1	MSMEG_2493	MSMEG_2500	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Conserved hypothetical protein.	0.548
ABK69986.1	ABK73701.1	MSMEG_2493	MSMEG_2496	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.826
ABK69986.1	ABK74467.1	MSMEG_2493	MSMEG_2495	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Decarboxylase; Identified by match to protein family HMM PF01177.	0.824
ABK69986.1	ABK75619.1	MSMEG_2493	MSMEG_2491	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910.	0.925
ABK69986.1	ABK75883.1	MSMEG_2493	MSMEG_2498	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	Conserved hypothetical protein.	0.660
ABK70707.1	ABK69986.1	MSMEG_2494	MSMEG_2493	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	0.844
ABK70707.1	ABK72091.1	MSMEG_2494	MSMEG_2497	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	0.735
ABK70707.1	ABK73625.1	MSMEG_2494	MSMEG_2500	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Conserved hypothetical protein.	0.592
ABK70707.1	ABK73701.1	MSMEG_2494	MSMEG_2496	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.720
ABK70707.1	ABK74467.1	MSMEG_2494	MSMEG_2495	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Decarboxylase; Identified by match to protein family HMM PF01177.	0.835
ABK70707.1	ABK75619.1	MSMEG_2494	MSMEG_2491	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910.	0.897
ABK70707.1	ABK75883.1	MSMEG_2494	MSMEG_2498	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	Conserved hypothetical protein.	0.631
ABK72091.1	ABK69986.1	MSMEG_2497	MSMEG_2493	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Aminotransferase, class I and II family protein; Identified by match to protein family HMM PF00155.	0.578
ABK72091.1	ABK70707.1	MSMEG_2497	MSMEG_2494	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Xaa-Pro aminopeptidase; Identified by match to protein family HMM PF00557.	0.735
ABK72091.1	ABK73625.1	MSMEG_2497	MSMEG_2500	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Conserved hypothetical protein.	0.746
ABK72091.1	ABK73701.1	MSMEG_2497	MSMEG_2496	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.865
ABK72091.1	ABK74467.1	MSMEG_2497	MSMEG_2495	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Decarboxylase; Identified by match to protein family HMM PF01177.	0.770
ABK72091.1	ABK75619.1	MSMEG_2497	MSMEG_2491	Identified by match to protein family HMM PF01425; Belongs to the amidase family.	Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910.	0.582