Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK72636.1Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (394 aa)    
Predicted Functional Partners:
ABK73920.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.991
ABK75303.1
Secreted protein.
  
 0.921
ABK70146.1
Efflux ABC transporter, permease protein, putative; Identified by match to protein family HMM PF02687.
  
 
 0.903
ABK71217.1
Amino acid permease; Identified by match to protein family HMM PF00324.
  
  
 0.778
TynA
Copper methylamine oxidase; Identified by match to protein family HMM PF01179; match to protein family HMM PF02727; match to protein family HMM PF02728.
  
  
 0.682
ABK70650.1
Amino acid permease superfamily protein; Identified by match to protein family HMM PF00324.
  
    0.598
ABK72852.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.561
ABK71332.1
Amino acid permease; Identified by match to protein family HMM PF00324.
  
  
 0.554
ABK71008.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073.
  
  
 0.547
ABK69762.1
Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
     
 0.545
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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