Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74540.1LipW protein; Identified by match to protein family HMM PF07859. (310 aa)    
Predicted Functional Partners:
ABK73100.1
3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase; Identified by match to protein family HMM PF00106.
    
 0.864
ABK71459.1
Cytochrome P450 superfamily protein; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
  
 0.844
ABK73097.1
Probable monooxygenase.
  
 
 0.829
ABK74292.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
     
 0.818
ABK74718.1
4-hydroxy-2-oxovalerate aldolase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
       0.814
ABK69534.1
Conserved hypothetical protein.
  
    0.812
ABK76121.1
Gluconolactonase; Identified by match to protein family HMM PF03758.
  
  
 0.587
ABK75211.1
Conserved hypothetical protein.
   
 0.575
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.526
ABK74939.1
Conserved hypothetical protein.
       0.518
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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