Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK70635.1Cupin 2, conserved barrel. (98 aa)    
Predicted Functional Partners:
ABK70568.1
Acetyltransferase; Identified by match to protein family HMM PF00583.
 
  
  0.608
ABK70992.1
Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
 
  
 0.489
ABK76042.1
Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.
 
   
 0.472
ABK71047.1
glycine/D-amino acid oxidase; Identified by match to protein family HMM PF01266.
 
  
 0.443
ABK75160.1
Conserved hypothetical protein.
 
     0.440
ABK74277.1
Conserved hypothetical protein.
 
     0.440
ABK74367.1
Transcriptional regulator, GntR family protein; Identified by match to protein family HMM PF00392; match to protein family HMM PF02082; match to protein family HMM PF07702.
  
  
 0.424
ABK71748.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
phnF
GntR-family protein transcriptional regulator; Represses the phnDCE operon, involved in the uptake of phosphate, under conditions of phosphate availability in the cell.
  
  
 0.424
ABK72103.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
  
  
 0.424
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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