Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69871.1Conserved hypothetical protein; Identified by match to protein family HMM PF04248. (235 aa)    
Predicted Functional Partners:
ABK75849.1
Conserved hypothetical protein.
       0.729
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.726
ABK72026.1
Conserved hypothetical protein.
       0.656
dehII-2
Haloacid dehalogenase, type II; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493.
 
     0.456
ABK75594.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.452
ABK72509.1
Conserved hypothetical protein.
  
     0.450
ABK70702.1
Conserved hypothetical protein.
  
     0.444
ABK70361.1
Transcriptional regulator, MarR family protein; Identified by match to protein family HMM PF01047.
  
     0.443
ABK75785.1
Identified by match to protein family HMM PF02668.
  
     0.441
ABK74564.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909.
  
     0.424
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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