Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71137.1Identified by match to protein family HMM PF01614. (246 aa)    
Predicted Functional Partners:
ABK76161.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.812
ABK74622.1
Putative transcription regulator; Identified by match to protein family HMM PF01614.
  
     0.771
ABK71104.1
Urea amidolyase; Identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724.
  
  
 0.719
ABK70759.1
Putative transcription regulator.
  
     0.688
ABK74641.1
Transcriptional regulator, IclR family protein, C- domain protein; Identified by match to protein family HMM PF01614.
  
     0.681
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423.
 
  
 0.659
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426.
 
   
 0.651
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422.
 
  
 0.649
pcaC-3
4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425.
     
 0.590
ABK73370.1
Identified by match to protein family HMM PF01575.
  
 
 0.575
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.