STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cbiMCobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891. (228 aa)    
Predicted Functional Partners:
ABK72168.1
Cobalt transport protein CbiM.
 
  
 0.999
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
 
 
 0.999
ABK74519.1
Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.
 
 
 0.998
ABK75067.1
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
 0.785
ABK74162.1
Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
   
  
 0.767
ABK70771.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
      
 0.763
ABK73374.1
Siderophore utilization protein; Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
      
 0.763
ABK73576.1
L-ornithine 5-monooxygenase.
      
 0.761
ABK69899.1
MmpL5 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
      
 0.671
ABK75882.1
acyl-CoA synthase; Identified by match to protein family HMM PF00501.
      
 0.666
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.