Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72802.1Conserved hypothetical protein. (347 aa)    
Predicted Functional Partners:
ABK73740.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
 0.975
ABK70778.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.950
ABK74846.1
ABC transporter permease; Identified by match to protein family HMM PF00528.
 
 0.829
ABK72289.1
Transporter permease 1; Identified by match to protein family HMM PF00528.
 
 0.813
ABK70043.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit; Identified by match to protein family HMM PF00528.
 
 0.806
ABK69710.1
Transporter permease 2, putative; Identified by match to protein family HMM PF00528.
 
 0.789
ABK73747.1
ABC transporter, membrane spanning protein, putative; Identified by match to protein family HMM PF00528.
 
 0.766
ABK72523.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit, putative; Identified by match to protein family HMM PF00528.
 
 0.759
ABK70061.1
ABC nitrate/sulfonate/bicarbonate family protein transporter, inner membrane subunit, putative; Identified by match to protein family HMM PF00528.
 
 0.752
ABK71685.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.742
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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