ABK72440.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK72440.1

Amino acid transporter; Identified by match to protein family HMM PF00324. (468 aa)

Predicted Functional Partners:

ABK71571.1

0.839

ABK73236.1

0.827

ABK69809.1

0.821

ABK75742.1

0.820

ABK73390.1

0.805

ABK69895.1

0.726

ABK74123.1

0.670

ABK74343.1

0.595

ABK74424.1

0.595

glgE

0.595

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69809.1	ABK72440.1	MSMEG_2681	MSMEG_2680	Proline imino-peptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; Belongs to the peptidase S33 family.	Amino acid transporter; Identified by match to protein family HMM PF00324.	0.821
ABK69809.1	ABK74123.1	MSMEG_2681	MSMEG_2682	Proline imino-peptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; Belongs to the peptidase S33 family.	Transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.648
ABK69895.1	ABK72440.1	MSMEG_1137	MSMEG_2680	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	Amino acid transporter; Identified by match to protein family HMM PF00324.	0.726
ABK69895.1	ABK74343.1	MSMEG_1137	MSMEG_3576	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	Alpha-amylase 3; Identified by match to protein family HMM PF00128.	0.595
ABK69895.1	ABK74424.1	MSMEG_1137	MSMEG_4696	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	Identified by match to protein family HMM PF00128.	0.595
ABK69895.1	glgE	MSMEG_1137	MSMEG_4916	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	Alpha-amylase family protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is also able to catalyze the reverse reaction in vitro. Cannot use glucose 1-phosphate as substrate. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.	0.595
ABK71571.1	ABK72440.1	MSMEG_0875	MSMEG_2680	Putative sialic acid transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Amino acid transporter; Identified by match to protein family HMM PF00324.	0.839
ABK71571.1	ABK73390.1	MSMEG_0875	MSMEG_5556	Putative sialic acid transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	MFS permease; Identified by match to protein family HMM PF07690.	0.804
ABK72440.1	ABK69809.1	MSMEG_2680	MSMEG_2681	Amino acid transporter; Identified by match to protein family HMM PF00324.	Proline imino-peptidase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; Belongs to the peptidase S33 family.	0.821
ABK72440.1	ABK69895.1	MSMEG_2680	MSMEG_1137	Amino acid transporter; Identified by match to protein family HMM PF00324.	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	0.726
ABK72440.1	ABK71571.1	MSMEG_2680	MSMEG_0875	Amino acid transporter; Identified by match to protein family HMM PF00324.	Putative sialic acid transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.839
ABK72440.1	ABK73236.1	MSMEG_2680	MSMEG_4919	Amino acid transporter; Identified by match to protein family HMM PF00324.	Conserved hypothetical protein.	0.827
ABK72440.1	ABK73390.1	MSMEG_2680	MSMEG_5556	Amino acid transporter; Identified by match to protein family HMM PF00324.	MFS permease; Identified by match to protein family HMM PF07690.	0.805
ABK72440.1	ABK74123.1	MSMEG_2680	MSMEG_2682	Amino acid transporter; Identified by match to protein family HMM PF00324.	Transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.670
ABK72440.1	ABK74343.1	MSMEG_2680	MSMEG_3576	Amino acid transporter; Identified by match to protein family HMM PF00324.	Alpha-amylase 3; Identified by match to protein family HMM PF00128.	0.595
ABK72440.1	ABK74424.1	MSMEG_2680	MSMEG_4696	Amino acid transporter; Identified by match to protein family HMM PF00324.	Identified by match to protein family HMM PF00128.	0.595
ABK72440.1	ABK75742.1	MSMEG_2680	MSMEG_2537	Amino acid transporter; Identified by match to protein family HMM PF00324.	Identified by match to protein family HMM PF07690.	0.820
ABK72440.1	glgE	MSMEG_2680	MSMEG_4916	Amino acid transporter; Identified by match to protein family HMM PF00324.	Alpha-amylase family protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is also able to catalyze the reverse reaction in vitro. Cannot use glucose 1-phosphate as substrate. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.	0.595
ABK73236.1	ABK72440.1	MSMEG_4919	MSMEG_2680	Conserved hypothetical protein.	Amino acid transporter; Identified by match to protein family HMM PF00324.	0.827
ABK73236.1	ABK75742.1	MSMEG_4919	MSMEG_2537	Conserved hypothetical protein.	Identified by match to protein family HMM PF07690.	0.494