Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70716.1Identified by match to protein family HMM PF01476. (185 aa)    
Predicted Functional Partners:
guaA
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.786
ABK75765.1
Putative conserved membrane alanine rich protein.
  
     0.743
ABK73081.1
Antigen 34 kDa.
  
   
 0.733
cinA
Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
 
  
  0.726
ABK74007.1
Conserved hypothetical protein.
  
     0.702
ABK73385.1
Conserved hypothetical protein.
 
   
 0.685
ABK73063.1
Conserved hypothetical protein.
  
     0.677
ABK75545.1
Conserved hypothetical protein.
 
   
 0.668
ABK74323.1
Conserved hypothetical protein.
 
     0.657
ABK74249.1
Conserved hypothetical protein.
  
     0.654
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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