Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71009.1Conserved hypothetical protein. (392 aa)    
Predicted Functional Partners:
ABK70706.1
Probable exported protein.
  
     0.733
ABK73349.1
Conserved hypothetical protein.
  
     0.729
lpqB
LpqB protein; May modulate activity of the MtrAB system in controlling homeostasis of the cell wall and cell division. Belongs to the LpqB lipoprotein family.
  
     0.717
ABK71827.1
TobH protein.
  
    0.714
ABK74620.1
Conserved hypothetical protein.
  
     0.696
ABK72891.1
Conserved hypothetical protein.
  
     0.695
rseA
Conserved hypothetical protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigE. ECF sigma factors are held in an inactive form by an anti-sigma factor (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily.
  
     0.694
ABK72868.1
Conserved hypothetical protein.
  
     0.692
ABK74693.1
Conserved hypothetical protein.
  
     0.690
ABK75677.1
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
  
     0.690
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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