Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK75214.1Diguanylate cyclase (ggdef) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (359 aa)    
Predicted Functional Partners:
ABK69623.1
Sensory box/response regulator; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
 
 0.934
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.824
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
 
 0.787
ABK75522.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05976.
  
 
 
 0.706
ABK69959.1
Cutinase superfamily protein; Identified by match to protein family HMM PF01083.
  
     0.702
ABK73391.1
Conserved hypothetical protein.
  
  
 0.695
ABK74049.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
 
 0.693
ABK74862.1
Conserved hypothetical protein.
 
   
 0.690
ABK72815.1
Conserved hypothetical protein.
 
  
 0.679
ABK72069.1
Conserved hypothetical protein.
 
 
  0.673
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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