ABK71061.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK71061.1

Conserved hypothetical protein; Identified by match to protein family HMM PF06778. (231 aa)

Predicted Functional Partners:

hemH

0.997

hemG

0.960

cyoE

0.938

ABK74857.1

0.935

hemE

0.927

ABK75712.1

0.832

ABK73068.1

0.692

pqqE

0.692

ABK70095.1

0.682

ABK74818.1

0.665

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70095.1	ABK71061.1	MSMEG_2778	MSMEG_2782	Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.682
ABK70095.1	ABK75712.1	MSMEG_2778	MSMEG_2779	Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.	Conserved hypothetical protein.	0.955
ABK70095.1	hemE	MSMEG_2778	MSMEG_2780	Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.629
ABK70095.1	hemG	MSMEG_2778	MSMEG_2781	Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.629
ABK71061.1	ABK70095.1	MSMEG_2782	MSMEG_2778	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.	0.682
ABK71061.1	ABK73068.1	MSMEG_2782	MSMEG_1423	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.692
ABK71061.1	ABK74818.1	MSMEG_2782	MSMEG_0754	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Conserved hypothetical protein.	0.665
ABK71061.1	ABK74857.1	MSMEG_2782	MSMEG_6519	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.	0.935
ABK71061.1	ABK75712.1	MSMEG_2782	MSMEG_2779	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Conserved hypothetical protein.	0.832
ABK71061.1	cyoE	MSMEG_2782	MSMEG_3105	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.938
ABK71061.1	hemE	MSMEG_2782	MSMEG_2780	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.927
ABK71061.1	hemG	MSMEG_2782	MSMEG_2781	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.960
ABK71061.1	hemH	MSMEG_2782	MSMEG_3152	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.997
ABK71061.1	pqqE	MSMEG_2782	MSMEG_3721	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).	0.692
ABK73068.1	ABK71061.1	MSMEG_1423	MSMEG_2782	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.692
ABK73068.1	cyoE	MSMEG_1423	MSMEG_3105	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.663
ABK73068.1	hemH	MSMEG_1423	MSMEG_3152	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.733
ABK74818.1	ABK71061.1	MSMEG_0754	MSMEG_2782	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.665
ABK74857.1	ABK71061.1	MSMEG_6519	MSMEG_2782	Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.935
ABK74857.1	cyoE	MSMEG_6519	MSMEG_3105	Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.	Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.	0.935